ImageScience 3.0.0
A B C D E F G H I K L M N O P R S T U V W X Y Z

A

absolute() - Method in class imagescience.image.Image
Replaces every image element by its absolute value.
add(byte) - Method in class imagescience.array.ByteArray
Appends the array with the given byte.
add(double) - Method in class imagescience.array.DoubleArray
Appends the array with the given double.
add(float) - Method in class imagescience.array.FloatArray
Appends the array with the given float.
add(int) - Method in class imagescience.array.IntArray
Appends the array with the given int.
add(long) - Method in class imagescience.array.LongArray
Appends the array with the given long.
add(short) - Method in class imagescience.array.ShortArray
Appends the array with the given short.
add(double) - Method in class imagescience.image.Image
Adds a value to every image element.
add(Image) - Method in class imagescience.image.Image
Adds an image element-by-element to this image.
add(Region) - Method in class imagescience.shape.Region
Adds the shape of the given region to the shape of this region.
ADDITIVE - Static variable in class imagescience.random.Randomizer
Additive insertion of random numbers.
ADEVIATION - Static variable in class imagescience.feature.Statistics
The average absolute deviation from the mean of the values in the image.
Affine - Class in imagescience.transform
Affine transforms an image using different interpolation schemes.
Affine() - Constructor for class imagescience.transform.Affine
Default constructor.
ALPHA - Static variable in class imagescience.image.ColorImage
The alpha component (stored in bits 24-31).
angle(double) - Method in class imagescience.shape.Ellipse
Sets the angle of the ellipse.
angle() - Method in class imagescience.shape.Ellipse
Returns the angle of the ellipse.
append(byte) - Method in class imagescience.array.ByteArray
Appends the array with the given byte.
append(double) - Method in class imagescience.array.DoubleArray
Appends the array with the given double.
append(float) - Method in class imagescience.array.FloatArray
Appends the array with the given float.
append(int) - Method in class imagescience.array.IntArray
Appends the array with the given int.
append(long) - Method in class imagescience.array.LongArray
Appends the array with the given long.
append(short) - Method in class imagescience.array.ShortArray
Appends the array with the given short.
ARBITRARY - Static variable in class imagescience.color.Palette
The arbitrary mode.
area() - Method in class imagescience.shape.Circle
Returns the area spanned by the circle.
area() - Method in class imagescience.shape.Ellipse
Returns the area spanned by the ellipse.
area() - Method in class imagescience.shape.Polygon
Returns the area spanned by the polygon.
area() - Method in class imagescience.shape.Rectangle
Returns the area spanned by the rectangle.
area() - Method in class imagescience.shape.Region
Returns the area covered by the region.
area() - Method in class imagescience.shape.Spline
Returns the area spanned by the spline.
area() - Method in class imagescience.shape.Square
Returns the area spanned by the square.
array() - Method in class imagescience.array.ByteArray
Returns a handle to the internal array.
array() - Method in class imagescience.array.DoubleArray
Returns a handle to the internal array.
array() - Method in class imagescience.array.FloatArray
Returns a handle to the internal array.
array() - Method in class imagescience.array.IntArray
Returns a handle to the internal array.
array() - Method in class imagescience.array.LongArray
Returns a handle to the internal array.
array() - Method in class imagescience.array.ShortArray
Returns a handle to the internal array.
ARROW - Static variable in class imagescience.utility.MouseCursor
The custom arrow cursor type.
Aspects - Class in imagescience.image
Contains aspect ratio or size information of up to 5D image elements.
Aspects() - Constructor for class imagescience.image.Aspects
Default constructor.
Aspects(double) - Constructor for class imagescience.image.Aspects
One-dimensional constructor.
Aspects(double, double) - Constructor for class imagescience.image.Aspects
Two-dimensional constructor.
Aspects(double, double, double) - Constructor for class imagescience.image.Aspects
Three-dimensional constructor.
Aspects(double, double, double, double) - Constructor for class imagescience.image.Aspects
Four-dimensional constructor.
Aspects(double, double, double, double, double) - Constructor for class imagescience.image.Aspects
Five-dimensional constructor.
aspects(Aspects) - Method in class imagescience.image.Image
Sets the aspect sizes of the image elements.
aspects() - Method in class imagescience.image.Image
Returns the aspect sizes of the image elements.
Axes - Class in imagescience.image
Contains information about the activity of the coordinate axes of up to 5D image data objects.
Axes() - Constructor for class imagescience.image.Axes
Default constructor.
Axes(boolean) - Constructor for class imagescience.image.Axes
One-dimensional constructor.
Axes(boolean, boolean) - Constructor for class imagescience.image.Axes
Two-dimensional constructor.
Axes(boolean, boolean, boolean) - Constructor for class imagescience.image.Axes
Three-dimensional constructor.
Axes(boolean, boolean, boolean, boolean) - Constructor for class imagescience.image.Axes
Four-dimensional constructor.
Axes(boolean, boolean, boolean, boolean, boolean) - Constructor for class imagescience.image.Axes
Five-dimensional constructor.
Axes(int) - Constructor for class imagescience.image.Axes
Five-dimensional constructor.
axes(int) - Method in class imagescience.image.Image
Sets the currently active Cartesian coordinate axis or axes.
axes() - Method in class imagescience.image.Image
Returns the current Cartesian coordinate axes activity.
axt - Variable in class imagescience.transform.Transform
The matrix element axt.
axx - Variable in class imagescience.transform.Transform
The matrix element axx.
axy - Variable in class imagescience.transform.Transform
The matrix element axy.
axz - Variable in class imagescience.transform.Transform
The matrix element axz.
ayt - Variable in class imagescience.transform.Transform
The matrix element ayt.
ayx - Variable in class imagescience.transform.Transform
The matrix element ayx.
ayy - Variable in class imagescience.transform.Transform
The matrix element ayy.
ayz - Variable in class imagescience.transform.Transform
The matrix element ayz.
azt - Variable in class imagescience.transform.Transform
The matrix element azt.
azx - Variable in class imagescience.transform.Transform
The matrix element azx.
azy - Variable in class imagescience.transform.Transform
The matrix element azy.
azz - Variable in class imagescience.transform.Transform
The matrix element azz.

B

background - Variable in class imagescience.transform.Affine
The value used for background filling.
BACKGROUND - Static variable in class imagescience.transform.Embed
Background filling with the value of Embed.background.
background - Variable in class imagescience.transform.Embed
The value used when the background filling is of type Embed.BACKGROUND.
background - Variable in class imagescience.transform.Rotate
The value used for background filling.
background - Variable in class imagescience.transform.Translate
The value used for background filling.
besselj(int, double) - Static method in class imagescience.utility.FMath
Returns the value at x of the Bessel function of the first kind of order n.
besselj0(double) - Static method in class imagescience.utility.FMath
Returns the value at x of the zeroth-order Bessel function of the first kind.
besselj1(double) - Static method in class imagescience.utility.FMath
Returns the value at x of the first-order Bessel function of the first kind.
binomial(Image, int, double, int, boolean) - Method in class imagescience.random.Randomizer
Randomizes images using a binomial random variable.
BinomialGenerator - Class in imagescience.random
Binomial random number generator.
BinomialGenerator() - Constructor for class imagescience.random.BinomialGenerator
Constructs a generator of random numbers from the binomial distribution with one trial of probability 0.5 and initialized with a random seed.
BinomialGenerator(int) - Constructor for class imagescience.random.BinomialGenerator
Constructs a generator of random numbers from the binomial distribution with one trial of probability 0.5 and initialized with the given seed.
BinomialGenerator(int, double) - Constructor for class imagescience.random.BinomialGenerator
Constructs a generator of random numbers from the binomial distribution with given number of trials of given probability and initialized with a random seed.
BinomialGenerator(int, double, int) - Constructor for class imagescience.random.BinomialGenerator
Constructs a generator of random numbers from the binomial distribution with given number of trials of given probability and initialized with the given seed.
bitmap(boolean) - Method in class imagescience.shape.Circle
 
bitmap(boolean) - Method in class imagescience.shape.Ellipse
 
bitmap(boolean) - Method in class imagescience.shape.Polygon
 
bitmap(boolean) - Method in class imagescience.shape.Rectangle
 
bitmap(boolean) - Method in class imagescience.shape.Region
 
bitmap(boolean) - Method in interface imagescience.shape.Shape
Computes a bitmapped version of the shape.
bitmap(boolean) - Method in class imagescience.shape.Spline
 
bitmap(boolean) - Method in class imagescience.shape.Square
 
BLUE - Static variable in class imagescience.image.ColorImage
The blue component (stored in bits 0-7).
border(Borders) - Method in class imagescience.image.ByteImage
 
border(Borders) - Method in class imagescience.image.ColorImage
 
border(Borders) - Method in class imagescience.image.FloatImage
 
border(Borders) - Method in class imagescience.image.Image
Returns a bordered copy of this image.
border(Borders) - Method in class imagescience.image.ShortImage
 
Borders - Class in imagescience.image
Contains the dimensions of the borders of up to 5D image data objects.
Borders() - Constructor for class imagescience.image.Borders
Default constructor.
Borders(int) - Constructor for class imagescience.image.Borders
One-dimensional constructor.
Borders(int, int) - Constructor for class imagescience.image.Borders
Two-dimensional constructor.
Borders(int, int, int) - Constructor for class imagescience.image.Borders
Three-dimensional constructor.
Borders(int, int, int, int) - Constructor for class imagescience.image.Borders
Four-dimensional constructor.
Borders(int, int, int, int, int) - Constructor for class imagescience.image.Borders
Five-dimensional constructor.
Bounds - Class in imagescience.shape
Contains bounding box information of up to 5D shapes.
Bounds() - Constructor for class imagescience.shape.Bounds
Default constructor.
Bounds(Point, Point) - Constructor for class imagescience.shape.Bounds
Constructor.
bounds() - Method in class imagescience.shape.Circle
 
bounds() - Method in class imagescience.shape.Ellipse
 
bounds() - Method in class imagescience.shape.Polygon
 
bounds() - Method in class imagescience.shape.Rectangle
 
bounds() - Method in class imagescience.shape.Region
 
bounds() - Method in interface imagescience.shape.Shape
Computes the bounding box of the shape.
bounds() - Method in class imagescience.shape.Spline
 
bounds() - Method in class imagescience.shape.Square
 
bspline(double, int, int) - Static method in class imagescience.utility.FMath
Returns the value at x of the dth derivative of the nth-degree centered uniform B-spline basis function.
BSPLINE3 - Static variable in class imagescience.transform.Affine
Cubic B-spline interpolation [2,3,4].
bspline3(double[], int) - Method in class imagescience.transform.Prefilter
Applies cubic B-spline prefiltering to an array.
bspline3(Image, Axes, Borders) - Method in class imagescience.transform.Prefilter
Applies cubic B-spline prefiltering to an image.
BSPLINE3 - Static variable in class imagescience.transform.Rotate
Cubic B-spline interpolation [2,3,4].
BSPLINE3 - Static variable in class imagescience.transform.Scale
Cubic B-spline interpolation [2,3,4].
BSPLINE3 - Static variable in class imagescience.transform.Translate
Cubic B-spline interpolation [2,3,4].
BSPLINE5 - Static variable in class imagescience.transform.Affine
Quintic B-spline interpolation [2,3,4].
bspline5(double[], int) - Method in class imagescience.transform.Prefilter
Applies quintic B-spline prefiltering to an array.
bspline5(Image, Axes, Borders) - Method in class imagescience.transform.Prefilter
Applies quintic B-spline prefiltering to an image.
BSPLINE5 - Static variable in class imagescience.transform.Rotate
Quintic B-spline interpolation [2,3,4].
BSPLINE5 - Static variable in class imagescience.transform.Scale
Quintic B-spline interpolation [2,3,4].
BSPLINE5 - Static variable in class imagescience.transform.Translate
Quintic B-spline interpolation [2,3,4].
ByteArray - Class in imagescience.array
A dynamic array of byte values.
ByteArray() - Constructor for class imagescience.array.ByteArray
Default constructor.
ByteArray(int) - Constructor for class imagescience.array.ByteArray
Capacity constructor.
ByteArray(int, int) - Constructor for class imagescience.array.ByteArray
Capacity constructor.
ByteArray(byte[]) - Constructor for class imagescience.array.ByteArray
Array constructor.
ByteImage - Class in imagescience.image
An image containing up to 5D elements of type byte.
ByteImage(Dimensions) - Constructor for class imagescience.image.ByteImage
Dimensions constructor.
ByteImage(ImagePlus) - Constructor for class imagescience.image.ByteImage
Wrapper constructor.
ByteImage(Image) - Constructor for class imagescience.image.ByteImage
Copy constructor.
ByteImage(Image, Borders) - Constructor for class imagescience.image.ByteImage
Copy constructor that allows adding borders.

C

c - Variable in class imagescience.image.Aspects
The absolute or relative aspect size in the c-dimension.
C - Static variable in class imagescience.image.Axes
The c-axis.
c - Variable in class imagescience.image.Axes
Indicates whether the c-axis is active.
c - Variable in class imagescience.image.Borders
The border size in the c-dimension.
c - Variable in class imagescience.image.Coordinates
The c-coordinate.
c - Variable in class imagescience.image.Dimensions
The c-dimension.
c - Variable in class imagescience.shape.Point
The c-coordinate of the point.
capacity() - Method in class imagescience.array.ByteArray
Returns the capacity of the array.
capacity() - Method in class imagescience.array.DoubleArray
Returns the capacity of the array.
capacity() - Method in class imagescience.array.FloatArray
Returns the capacity of the array.
capacity() - Method in class imagescience.array.IntArray
Returns the capacity of the array.
capacity() - Method in class imagescience.array.LongArray
Returns the capacity of the array.
capacity() - Method in class imagescience.array.ShortArray
Returns the capacity of the array.
ceil(double) - Static method in class imagescience.utility.FMath
Returns the ceiling of the given value.
center(double, double) - Method in class imagescience.shape.Circle
Sets the center position of the circle.
center(double, double) - Method in class imagescience.shape.Ellipse
Sets the center position of the ellipse.
chars() - Method in class imagescience.utility.LineReader
Returns the number of characters read using this reader.
check() - Static method in class imagescience.utility.VTKResource
Checks whether VTK can be used in the current environment.
chop(double) - Method in class imagescience.utility.Formatter
Sets the limit below which numbers are chopped to 0 by method Formatter.d2s(double).
Circle - Class in imagescience.shape
A circle in the x-y plane.
Circle() - Constructor for class imagescience.shape.Circle
Default constructor.
Circle(double, double, double) - Constructor for class imagescience.shape.Circle
Constructs a circle with given center position and radius.
Circle(Circle) - Constructor for class imagescience.shape.Circle
Copy constructor.
CLAMP - Static variable in class imagescience.transform.Embed
Background filling by clamping the values in the input image.
clear() - Method in class imagescience.array.ByteArray
Removes all elements.
clear() - Method in class imagescience.array.DoubleArray
Removes all elements.
clear() - Method in class imagescience.array.FloatArray
Removes all elements.
clear() - Method in class imagescience.array.IntArray
Removes all elements.
clear() - Method in class imagescience.array.LongArray
Removes all elements.
clear() - Method in class imagescience.array.ShortArray
Removes all elements.
clip(double, double, double) - Static method in class imagescience.utility.FMath
Returns the value of d clipped to the range [min,max].
close() - Method in class imagescience.utility.LineReader
Closes the character stream reader and releases any system resources associated with it.
color(double) - Method in class imagescience.color.Wave2Color
Converts a wavelength to its corresponding RGBA color values.
COLOR - Static variable in class imagescience.utility.I5DResource
The color displaying mode.
ColorImage - Class in imagescience.image
An image containing up to 5D elements of type int representing aRGB-color values.
ColorImage(Dimensions) - Constructor for class imagescience.image.ColorImage
Dimensions constructor.
ColorImage(ImagePlus) - Constructor for class imagescience.image.ColorImage
Wrapper constructor.
ColorImage(Image) - Constructor for class imagescience.image.ColorImage
Copy constructor.
ColorImage(Image, Borders) - Constructor for class imagescience.image.ColorImage
Copy constructor that allows adding borders.
compare(String, String) - Static method in class imagescience.utility.VersionChecker
Indicates how the given version strings compare to each other.
component() - Method in class imagescience.image.ColorImage
Indicates the currently active component.
component(int) - Method in class imagescience.image.ColorImage
Sets the active component.
Cone - Class in imagescience.mesh
Triangular mesh of a cone in 3D.
Cone(int, boolean) - Constructor for class imagescience.mesh.Cone
Constructs the mesh of a unit cone at the given level of detail.
contains(Point) - Method in class imagescience.shape.Circle
Indicates the position of a point relative to the circle.
contains(double, double) - Method in class imagescience.shape.Circle
Indicates the position of a point relative to the circle.
contains(Point) - Method in class imagescience.shape.Ellipse
Indicates the position of a point relative to the ellipse.
contains(double, double) - Method in class imagescience.shape.Ellipse
Indicates the position of a point relative to the ellipse.
contains(Point) - Method in class imagescience.shape.Polygon
Indicates the position of a point relative to the polygon.
contains(double, double) - Method in class imagescience.shape.Polygon
Indicates the position of a point relative to the polygon.
contains(Point) - Method in class imagescience.shape.Rectangle
Indicates the position of a point relative to the rectangle.
contains(double, double) - Method in class imagescience.shape.Rectangle
Indicates the position of a point relative to the rectangle.
contains(Point) - Method in class imagescience.shape.Region
Indicates the position of a point relative to the region.
contains(double, double) - Method in class imagescience.shape.Region
Indicates the position of a point relative to the region.
contains(Point) - Method in interface imagescience.shape.Shape
Indicates the position of a point relative to the shape.
contains(Point) - Method in class imagescience.shape.Spline
Indicates the position of a point relative to the spline.
contains(double, double) - Method in class imagescience.shape.Spline
Indicates the position of a point relative to the spline.
contains(Point) - Method in class imagescience.shape.Square
Indicates the position of a point relative to the square.
contains(double, double) - Method in class imagescience.shape.Square
Indicates the position of a point relative to the square.
contour() - Method in class imagescience.shape.Circle
Returns the contour of the circle.
contour() - Method in class imagescience.shape.Ellipse
Returns the contour of the ellipse.
contour() - Method in class imagescience.shape.Polygon
Returns the contour of the polygon.
contour() - Method in class imagescience.shape.Rectangle
Returns the contour of the rectangle.
contour() - Method in class imagescience.shape.Region
Returns the contour of the region.
contour() - Method in class imagescience.shape.Spline
Returns the contour of the spline.
contour() - Method in class imagescience.shape.Square
Returns the contour of the square.
convert(ImagePlus, boolean) - Static method in class imagescience.utility.I5DResource
Converts an image to an Image5D object.
Coordinates - Class in imagescience.image
Contains 5D integer coordinates.
Coordinates() - Constructor for class imagescience.image.Coordinates
Default constructor.
Coordinates(int) - Constructor for class imagescience.image.Coordinates
One-dimensional constructor.
Coordinates(int, int) - Constructor for class imagescience.image.Coordinates
Two-dimensional constructor.
Coordinates(int, int, int) - Constructor for class imagescience.image.Coordinates
Three-dimensional constructor.
Coordinates(int, int, int, int) - Constructor for class imagescience.image.Coordinates
Four-dimensional constructor.
Coordinates(int, int, int, int, int) - Constructor for class imagescience.image.Coordinates
Five-dimensional constructor.
Coordinates(Coordinates) - Constructor for class imagescience.image.Coordinates
Copy constructor.
create(Dimensions, String) - Static method in class imagescience.image.Image
Creates a new Image of given dimensions and type.
create(int) - Method in class imagescience.utility.MouseCursor
Creates a new cursor of the requested custom type.
Crop - Class in imagescience.transform
Crops an image.
Crop() - Constructor for class imagescience.transform.Crop
Default constructor.
CROSS - Static variable in class imagescience.utility.MouseCursor
The custom cross cursor type.
Cube - Class in imagescience.mesh
Triangular mesh of a cube in 3D.
Cube() - Constructor for class imagescience.mesh.Cube
Constructs the mesh of a unit cube.
CUBIC - Static variable in class imagescience.transform.Affine
Cubic convolution interpolation [1].
CUBIC - Static variable in class imagescience.transform.Rotate
Cubic convolution interpolation [1].
CUBIC - Static variable in class imagescience.transform.Scale
Cubic convolution interpolation [1].
CUBIC - Static variable in class imagescience.transform.Translate
Cubic convolution interpolation [1].
Cylinder - Class in imagescience.mesh
Triangular mesh of a cylinder in 3D.
Cylinder(int, boolean) - Constructor for class imagescience.mesh.Cylinder
Constructs the mesh of a unit cylinder at the given level of detail.

D

d2s(double) - Method in class imagescience.utility.Formatter
Returns a String representation of a double value.
decs(int) - Method in class imagescience.utility.Formatter
Sets the maximum number of decimals used by method Formatter.d2s(double).
density(ImagePlus, int) - Static method in class imagescience.utility.I5DResource
Returns the density calibration of a specific channel of an image.
DETECT - Static variable in class imagescience.segment.Extremizer
The detection mode.
determinant() - Method in class imagescience.transform.Transform
Returns the determinant of the transformation matrix.
Differentiator - Class in imagescience.feature
Computes Gaussian derivatives of images.
Differentiator() - Constructor for class imagescience.feature.Differentiator
Default constructor.
differentiator - Variable in class imagescience.feature.Edges
The object used for image differentiation.
differentiator - Variable in class imagescience.feature.Hessian
The object used for image differentiation.
differentiator - Variable in class imagescience.feature.Laplacian
The object used for image differentiation.
differentiator - Variable in class imagescience.feature.Structure
The object used for image differentiation.
Dimensions - Class in imagescience.image
Contains the dimensions of up to 5D image data objects.
Dimensions() - Constructor for class imagescience.image.Dimensions
Default constructor.
Dimensions(int) - Constructor for class imagescience.image.Dimensions
One-dimensional constructor.
Dimensions(int, int) - Constructor for class imagescience.image.Dimensions
Two-dimensional constructor.
Dimensions(int, int, int) - Constructor for class imagescience.image.Dimensions
Three-dimensional constructor.
Dimensions(int, int, int, int) - Constructor for class imagescience.image.Dimensions
Four-dimensional constructor.
Dimensions(int, int, int, int, int) - Constructor for class imagescience.image.Dimensions
Five-dimensional constructor.
dimensions() - Method in class imagescience.image.Image
Returns the dimensions of the image.
display() - Method in class imagescience.utility.Progressor
Indicates whether progress is displayed.
display(boolean) - Method in class imagescience.utility.Progressor
Determines whether progress is displayed.
divide(double) - Method in class imagescience.image.Image
Divides every image element by a value.
divide(Image) - Method in class imagescience.image.Image
Divides this image element-by-element by an image.
DoubleArray - Class in imagescience.array
A dynamic array of double values.
DoubleArray() - Constructor for class imagescience.array.DoubleArray
Default constructor.
DoubleArray(int) - Constructor for class imagescience.array.DoubleArray
Capacity constructor.
DoubleArray(int, int) - Constructor for class imagescience.array.DoubleArray
Capacity constructor.
DoubleArray(double[]) - Constructor for class imagescience.array.DoubleArray
Array constructor.
duplicate() - Method in class imagescience.array.ByteArray
Duplicates the array.
duplicate() - Method in class imagescience.array.DoubleArray
Duplicates the array.
duplicate() - Method in class imagescience.array.FloatArray
Duplicates the array.
duplicate() - Method in class imagescience.array.IntArray
Duplicates the array.
duplicate() - Method in class imagescience.array.LongArray
Duplicates the array.
duplicate() - Method in class imagescience.array.ShortArray
Duplicates the array.
duplicate() - Method in class imagescience.image.Aspects
Duplicates this object.
duplicate() - Method in class imagescience.image.Axes
Duplicates this object.
duplicate() - Method in class imagescience.image.Borders
Duplicates this object.
duplicate() - Method in class imagescience.image.ByteImage
 
duplicate() - Method in class imagescience.image.ColorImage
 
duplicate() - Method in class imagescience.image.Coordinates
Duplicates this object.
duplicate() - Method in class imagescience.image.Dimensions
Duplicates this object.
duplicate() - Method in class imagescience.image.FloatImage
 
duplicate() - Method in class imagescience.image.Image
Duplicates this image.
duplicate() - Method in class imagescience.image.ShortImage
 
duplicate() - Method in class imagescience.shape.Bounds
Duplicates the bounds.
duplicate() - Method in class imagescience.shape.Circle
 
duplicate() - Method in class imagescience.shape.Ellipse
 
duplicate() - Method in class imagescience.shape.Point
Returns an exact copy of this object.
duplicate() - Method in class imagescience.shape.Polygon
 
duplicate() - Method in class imagescience.shape.Rectangle
 
duplicate() - Method in class imagescience.shape.Region
 
duplicate() - Method in interface imagescience.shape.Shape
Duplicates the shape.
duplicate() - Method in class imagescience.shape.Spline
 
duplicate() - Method in class imagescience.shape.Square
 
duplicate() - Method in class imagescience.transform.Transform
Duplicates the transform.

E

eccentricity() - Method in class imagescience.shape.Ellipse
Returns the eccentricity of the ellipse.
edge(double) - Method in class imagescience.shape.Square
Sets the edge length of the square.
edge() - Method in class imagescience.shape.Square
Returns the edge length of the square.
Edges - Class in imagescience.feature
Detects edges in images.
Edges() - Constructor for class imagescience.feature.Edges
Default constructor.
ELEMENTS - Static variable in class imagescience.feature.Statistics
The number of elements in the image.
elements() - Method in class imagescience.image.Image
Returns the number of elements in the image.
Ellipse - Class in imagescience.shape
An ellipse in the x-y plane.
Ellipse() - Constructor for class imagescience.shape.Ellipse
Default constructor.
Ellipse(double, double, double, double, double) - Constructor for class imagescience.shape.Ellipse
Constructs an ellipse with given center position, major and minor radii, and angle.
Ellipse(Ellipse) - Constructor for class imagescience.shape.Ellipse
Copy constructor.
Embed - Class in imagescience.transform
Embeds an image into a larger image.
Embed() - Constructor for class imagescience.transform.Embed
Default constructor.
empty() - Method in class imagescience.array.ByteArray
Indicates whether this array has no elements.
empty() - Method in class imagescience.array.DoubleArray
Indicates whether this array has no elements.
empty() - Method in class imagescience.array.FloatArray
Indicates whether this array has no elements.
empty() - Method in class imagescience.array.IntArray
Indicates whether this array has no elements.
empty() - Method in class imagescience.array.LongArray
Indicates whether this array has no elements.
empty() - Method in class imagescience.array.ShortArray
Indicates whether this array has no elements.
empty() - Method in class imagescience.shape.Circle
 
empty() - Method in class imagescience.shape.Ellipse
 
empty() - Method in class imagescience.shape.Polygon
 
empty() - Method in class imagescience.shape.Rectangle
 
empty() - Method in class imagescience.shape.Region
 
empty() - Method in interface imagescience.shape.Shape
Indicates whether the shape is empty.
empty() - Method in class imagescience.shape.Spline
 
empty() - Method in class imagescience.shape.Square
 
enforce() - Method in class imagescience.utility.Progressor
Indicates whether repainting of the progress bar is enforced.
enforce(boolean) - Method in class imagescience.utility.Progressor
Determines whether repainting of the progress bar is enforced.
ensure(int) - Method in class imagescience.array.ByteArray
Ensures that the capacity of the array is at least the given capacity.
ensure(int) - Method in class imagescience.array.DoubleArray
Ensures that the capacity of the array is at least the given capacity.
ensure(int) - Method in class imagescience.array.FloatArray
Ensures that the capacity of the array is at least the given capacity.
ensure(int) - Method in class imagescience.array.IntArray
Ensures that the capacity of the array is at least the given capacity.
ensure(int) - Method in class imagescience.array.LongArray
Ensures that the capacity of the array is at least the given capacity.
ensure(int) - Method in class imagescience.array.ShortArray
Ensures that the capacity of the array is at least the given capacity.
equals(ByteArray) - Method in class imagescience.array.ByteArray
Indicates whether this array contains the same data as the given array.
equals(DoubleArray) - Method in class imagescience.array.DoubleArray
Indicates whether this array contains the same data as the given array.
equals(FloatArray) - Method in class imagescience.array.FloatArray
Indicates whether this array contains the same data as the given array.
equals(IntArray) - Method in class imagescience.array.IntArray
Indicates whether this array contains the same data as the given array.
equals(LongArray) - Method in class imagescience.array.LongArray
Indicates whether this array contains the same data as the given array.
equals(ShortArray) - Method in class imagescience.array.ShortArray
Indicates whether this array contains the same data as the given array.
equals(Aspects) - Method in class imagescience.image.Aspects
Indicates whether this object is in the same state as the given object.
equals(Axes) - Method in class imagescience.image.Axes
Indicates whether this object is in the same state as the given object.
equals(Borders) - Method in class imagescience.image.Borders
Indicates whether this object is in the same state as the given object.
equals(Coordinates) - Method in class imagescience.image.Coordinates
Indicates whether this object is in the same state as the given object.
equals(Dimensions) - Method in class imagescience.image.Dimensions
Indicates whether this object is in the same state as the given object.
equals(Bounds) - Method in class imagescience.shape.Bounds
Indicates whether this bounding box is the same as the given bounding box.
equals(Shape) - Method in class imagescience.shape.Circle
 
equals(Shape) - Method in class imagescience.shape.Ellipse
 
equals(Point) - Method in class imagescience.shape.Point
Indicates whether this object represents the same point as the given object.
equals(Shape) - Method in class imagescience.shape.Polygon
 
equals(Shape) - Method in class imagescience.shape.Rectangle
 
equals(Shape) - Method in class imagescience.shape.Region
 
equals(Shape) - Method in interface imagescience.shape.Shape
Indicates whether this object has the same shape as the given object.
equals(Shape) - Method in class imagescience.shape.Spline
 
equals(Shape) - Method in class imagescience.shape.Square
 
equals(Transform) - Method in class imagescience.transform.Transform
Indicates whether the transform is equal to the given transform.
exclusive(Region) - Method in class imagescience.shape.Region
Sets the shape of this region to the union of its current shape and the shape of the given region, minus their intersection.
exponential(Image, double, int, boolean) - Method in class imagescience.random.Randomizer
Randomizes images using an exponential random variable.
ExponentialGenerator - Class in imagescience.random
Exponential random number generator.
ExponentialGenerator() - Constructor for class imagescience.random.ExponentialGenerator
Constructs a generator of random numbers from the exponential distribution with unit value at 0 and initialized with a random seed.
ExponentialGenerator(int) - Constructor for class imagescience.random.ExponentialGenerator
Constructs a generator of random numbers from the exponential distribution with unit value at 0 and initialized with the given seed.
ExponentialGenerator(double) - Constructor for class imagescience.random.ExponentialGenerator
Constructs a generator of random numbers from the exponential distribution with value lambda at 0 and initialized with a random seed.
ExponentialGenerator(double, int) - Constructor for class imagescience.random.ExponentialGenerator
Constructs a generator of random numbers from the exponential distribution with value lambda at 0 and initialized with the given seed.
EXTRACT - Static variable in class imagescience.segment.Extremizer
The extraction mode.
extrema() - Method in class imagescience.image.Image
Returns the extreme values in the image.
Extremizer - Class in imagescience.segment
Finds local extrema in images.
Extremizer() - Constructor for class imagescience.segment.Extremizer
Default constructor.

F

FFT - Class in imagescience.fourier
Computes forward and inverse Fourier transforms of images.
FFT() - Constructor for class imagescience.fourier.FFT
Default constructor.
first() - Method in class imagescience.array.ByteArray
Returns the first element of the array.
first() - Method in class imagescience.array.DoubleArray
Returns the first element of the array.
first() - Method in class imagescience.array.FloatArray
Returns the first element of the array.
first() - Method in class imagescience.array.IntArray
Returns the first element of the array.
first() - Method in class imagescience.array.LongArray
Returns the first element of the array.
first() - Method in class imagescience.array.ShortArray
Returns the first element of the array.
FloatArray - Class in imagescience.array
A dynamic array of float values.
FloatArray() - Constructor for class imagescience.array.FloatArray
Default constructor.
FloatArray(int) - Constructor for class imagescience.array.FloatArray
Capacity constructor.
FloatArray(int, int) - Constructor for class imagescience.array.FloatArray
Capacity constructor.
FloatArray(float[]) - Constructor for class imagescience.array.FloatArray
Array constructor.
FloatImage - Class in imagescience.image
An image containing up to 5D elements of type float.
FloatImage(Dimensions) - Constructor for class imagescience.image.FloatImage
Dimensions constructor.
FloatImage(ImagePlus) - Constructor for class imagescience.image.FloatImage
Wrapper constructor.
FloatImage(Image) - Constructor for class imagescience.image.FloatImage
Copy constructor.
FloatImage(Image, Borders) - Constructor for class imagescience.image.FloatImage
Copy constructor that allows adding borders.
floor(double) - Static method in class imagescience.utility.FMath
Returns the floor of the given value.
FMath - Class in imagescience.utility
Performs elementary mathematical operations and function evaluations.
FMath() - Constructor for class imagescience.utility.FMath
Default constructor.
Formatter - Class in imagescience.utility
Converts floating-point numbers to formatted strings.
Formatter() - Constructor for class imagescience.utility.Formatter
Default constructor.
forward(Image, Image, Axes) - Method in class imagescience.fourier.FFT
Applies the forward Fourier transform to complex-valued images along the specified axes.
FULL - Static variable in class imagescience.image.ColorImage
The full 32-bit integer value.

G

gamma(Image, int, int, boolean) - Method in class imagescience.random.Randomizer
Randomizes images using a gamma random variable.
GammaGenerator - Class in imagescience.random
Gamma random number generator of positive integer order.
GammaGenerator() - Constructor for class imagescience.random.GammaGenerator
Constructs a generator of random numbers from the first-order gamma distribution initialized with a random seed
GammaGenerator(int) - Constructor for class imagescience.random.GammaGenerator
Constructs a generator of random numbers from the gamma distribution with given order and initialized with a random seed.
GammaGenerator(int, int) - Constructor for class imagescience.random.GammaGenerator
Constructs a generator of random numbers from the gamma distribution with given order and initialized with the given seed.
gauss(Image, double) - Method in class imagescience.feature.Smoother
Applies Gaussian smoothing to images.
gauss(double, double) - Static method in class imagescience.utility.FMath
Returns The value at x of the Gaussian distribution with standard deviation s.
gaussian(Image, double, double, int, boolean) - Method in class imagescience.random.Randomizer
Randomizes images using a Gaussian random variable.
GaussianGenerator - Class in imagescience.random
Gaussian random number generator.
GaussianGenerator() - Constructor for class imagescience.random.GaussianGenerator
Constructs a generator of random numbers from the Gaussian distribution with zero mean and unit standard deviation and initialized with a random seed.
GaussianGenerator(int) - Constructor for class imagescience.random.GaussianGenerator
Constructs a generator of random numbers from the Gaussian distribution with zero mean and unit standard deviation and initialized with the given seed.
GaussianGenerator(double, double) - Constructor for class imagescience.random.GaussianGenerator
Constructs a generator of random numbers from the Gaussian distribution with given mean and standard deviation stdev and initialized with a random seed.
GaussianGenerator(double, double, int) - Constructor for class imagescience.random.GaussianGenerator
Constructs a generator of random numbers from the Gaussian distribution with given mean and standard deviation stdev and initialized with the given seed.
get() - Method in class imagescience.array.ByteArray
Returns a handle to the internal array.
get(int) - Method in class imagescience.array.ByteArray
Returns the element at the given index in the array.
get() - Method in class imagescience.array.DoubleArray
Returns a handle to the internal array.
get(int) - Method in class imagescience.array.DoubleArray
Returns the element at the given index in the array.
get() - Method in class imagescience.array.FloatArray
Returns a handle to the internal array.
get(int) - Method in class imagescience.array.FloatArray
Returns the element at the given index in the array.
get() - Method in class imagescience.array.IntArray
Returns a handle to the internal array.
get(int) - Method in class imagescience.array.IntArray
Returns the element at the given index in the array.
get() - Method in class imagescience.array.LongArray
Returns a handle to the internal array.
get(int) - Method in class imagescience.array.LongArray
Returns the element at the given index in the array.
get() - Method in class imagescience.array.ShortArray
Returns a handle to the internal array.
get(int) - Method in class imagescience.array.ShortArray
Returns the element at the given index in the array.
get(int) - Method in class imagescience.color.Palette
Returns the color at the given index (modulo 100).
get(int) - Method in class imagescience.feature.Statistics
Returns the value of the requested statistic.
get(Coordinates) - Method in class imagescience.image.ByteImage
 
get(Coordinates, double[]) - Method in class imagescience.image.ByteImage
 
get(Coordinates, double[][]) - Method in class imagescience.image.ByteImage
 
get(Coordinates, double[][][]) - Method in class imagescience.image.ByteImage
 
get(Coordinates, double[][][][]) - Method in class imagescience.image.ByteImage
 
get(Coordinates, double[][][][][]) - Method in class imagescience.image.ByteImage
 
get(Coordinates, float[]) - Method in class imagescience.image.ByteImage
 
get(Coordinates, float[][]) - Method in class imagescience.image.ByteImage
 
get(Coordinates, float[][][]) - Method in class imagescience.image.ByteImage
 
get(Coordinates, float[][][][]) - Method in class imagescience.image.ByteImage
 
get(Coordinates, float[][][][][]) - Method in class imagescience.image.ByteImage
 
get() - Method in class imagescience.image.ColorImage
Returns the currently active component as a new Image.
get(Coordinates) - Method in class imagescience.image.ColorImage
 
get(Coordinates, double[]) - Method in class imagescience.image.ColorImage
 
get(Coordinates, double[][]) - Method in class imagescience.image.ColorImage
 
get(Coordinates, double[][][]) - Method in class imagescience.image.ColorImage
 
get(Coordinates, double[][][][]) - Method in class imagescience.image.ColorImage
 
get(Coordinates, double[][][][][]) - Method in class imagescience.image.ColorImage
 
get(Coordinates, float[]) - Method in class imagescience.image.ColorImage
 
get(Coordinates, float[][]) - Method in class imagescience.image.ColorImage
 
get(Coordinates, float[][][]) - Method in class imagescience.image.ColorImage
 
get(Coordinates, float[][][][]) - Method in class imagescience.image.ColorImage
 
get(Coordinates, float[][][][][]) - Method in class imagescience.image.ColorImage
 
get(Coordinates) - Method in class imagescience.image.FloatImage
 
get(Coordinates, double[]) - Method in class imagescience.image.FloatImage
 
get(Coordinates, double[][]) - Method in class imagescience.image.FloatImage
 
get(Coordinates, double[][][]) - Method in class imagescience.image.FloatImage
 
get(Coordinates, double[][][][]) - Method in class imagescience.image.FloatImage
 
get(Coordinates, double[][][][][]) - Method in class imagescience.image.FloatImage
 
get(Coordinates, float[]) - Method in class imagescience.image.FloatImage
 
get(Coordinates, float[][]) - Method in class imagescience.image.FloatImage
 
get(Coordinates, float[][][]) - Method in class imagescience.image.FloatImage
 
get(Coordinates, float[][][][]) - Method in class imagescience.image.FloatImage
 
get(Coordinates, float[][][][][]) - Method in class imagescience.image.FloatImage
 
get(Coordinates) - Method in class imagescience.image.Image
Returns the value of the image element at the given coordinates.
get(Coordinates, float[]) - Method in class imagescience.image.Image
Reads values in one dimension from the image into the array.
get(Coordinates, double[]) - Method in class imagescience.image.Image
Reads values in one dimension from the image into the array.
get(Coordinates, float[][]) - Method in class imagescience.image.Image
Reads values in two dimensions from the image into the array.
get(Coordinates, double[][]) - Method in class imagescience.image.Image
Reads values in two dimensions from the image into the array.
get(Coordinates, float[][][]) - Method in class imagescience.image.Image
Reads values in three dimensions from the image into the array.
get(Coordinates, double[][][]) - Method in class imagescience.image.Image
Reads values in three dimensions from the image into the array.
get(Coordinates, float[][][][]) - Method in class imagescience.image.Image
Reads values in four dimensions from the image into the array.
get(Coordinates, double[][][][]) - Method in class imagescience.image.Image
Reads values in four dimensions from the image into the array.
get(Coordinates, float[][][][][]) - Method in class imagescience.image.Image
Reads values in all five dimensions from the image into the array.
get(Coordinates, double[][][][][]) - Method in class imagescience.image.Image
Reads values in all five dimensions from the image into the array.
get(Coordinates) - Method in class imagescience.image.ShortImage
 
get(Coordinates, double[]) - Method in class imagescience.image.ShortImage
 
get(Coordinates, double[][]) - Method in class imagescience.image.ShortImage
 
get(Coordinates, double[][][]) - Method in class imagescience.image.ShortImage
 
get(Coordinates, double[][][][]) - Method in class imagescience.image.ShortImage
 
get(Coordinates, double[][][][][]) - Method in class imagescience.image.ShortImage
 
get(Coordinates, float[]) - Method in class imagescience.image.ShortImage
 
get(Coordinates, float[][]) - Method in class imagescience.image.ShortImage
 
get(Coordinates, float[][][]) - Method in class imagescience.image.ShortImage
 
get(Coordinates, float[][][][]) - Method in class imagescience.image.ShortImage
 
get(Coordinates, float[][][][][]) - Method in class imagescience.image.ShortImage
 
get() - Method in class imagescience.transform.Transform
Returns the transformation matrix as a 4 x 4 double array.
get(int, int) - Method in class imagescience.transform.Transform
Returns the element at the given row and column of the transformation matrix.
GRAY - Static variable in class imagescience.utility.I5DResource
The gray-scale displaying mode.
GREEN - Static variable in class imagescience.image.ColorImage
The green component (stored in bits 8-15).

H

HAND - Static variable in class imagescience.utility.MouseCursor
The custom hand cursor type.
hard(Image, double) - Method in class imagescience.segment.Thresholder
Applies hard thresholding to an image.
height(double) - Method in class imagescience.shape.Rectangle
Sets the height of the rectangle.
height() - Method in class imagescience.shape.Rectangle
Returns the height of the rectangle.
Hessian - Class in imagescience.feature
Computes Hessian eigenimages.
Hessian() - Constructor for class imagescience.feature.Hessian
Default constructor.
hysteresis(Image, double, double) - Method in class imagescience.segment.Thresholder
Applies hysteresis thresholding to an image.

I

I5DResource - Class in imagescience.utility
Provides Image5D utility methods.
I5DResource() - Constructor for class imagescience.utility.I5DResource
Default constructor.
id() - Method in class imagescience.image.Image
Returns the image's ID.
identity() - Method in class imagescience.transform.Transform
Indicates whether the transformation matrix is equal to the identity matrix.
Image - Class in imagescience.image
Abstract base class for images containing up to 5D elements.
imageplus() - Method in class imagescience.image.ByteImage
 
imageplus() - Method in class imagescience.image.ColorImage
 
imageplus() - Method in class imagescience.image.FloatImage
 
imageplus() - Method in class imagescience.image.Image
Returns this image in the form of an ImagePlus object.
imageplus() - Method in class imagescience.image.ShortImage
 
imagescience - package imagescience
 
ImageScience - Class in imagescience
Contains the name and version number of the ImageScience library.
ImageScience() - Constructor for class imagescience.ImageScience
Default constructor.
imagescience.array - package imagescience.array
 
imagescience.color - package imagescience.color
 
imagescience.feature - package imagescience.feature
 
imagescience.fourier - package imagescience.fourier
 
imagescience.image - package imagescience.image
 
imagescience.mesh - package imagescience.mesh
 
imagescience.random - package imagescience.random
 
imagescience.segment - package imagescience.segment
 
imagescience.shape - package imagescience.shape
 
imagescience.transform - package imagescience.transform
 
imagescience.utility - package imagescience.utility
 
increment() - Method in class imagescience.array.ByteArray
Returns the capacity increment of the array.
increment(int) - Method in class imagescience.array.ByteArray
Sets the capacity increment of the array.
increment() - Method in class imagescience.array.DoubleArray
Returns the capacity increment of the array.
increment(int) - Method in class imagescience.array.DoubleArray
Sets the capacity increment of the array.
increment() - Method in class imagescience.array.FloatArray
Returns the capacity increment of the array.
increment(int) - Method in class imagescience.array.FloatArray
Sets the capacity increment of the array.
increment() - Method in class imagescience.array.IntArray
Returns the capacity increment of the array.
increment(int) - Method in class imagescience.array.IntArray
Sets the capacity increment of the array.
increment() - Method in class imagescience.array.LongArray
Returns the capacity increment of the array.
increment(int) - Method in class imagescience.array.LongArray
Sets the capacity increment of the array.
increment() - Method in class imagescience.array.ShortArray
Returns the capacity increment of the array.
increment(int) - Method in class imagescience.array.ShortArray
Sets the capacity increment of the array.
index(Color) - Method in class imagescience.color.Palette
Returns the index of the given color.
inf(String) - Method in class imagescience.utility.Formatter
Sets the string representation of an infinite value used by method Formatter.d2s(double).
insert(byte, int) - Method in class imagescience.array.ByteArray
Inserts the given byte at the given index in the array.
insert(double, int) - Method in class imagescience.array.DoubleArray
Inserts the given double at the given index in the array.
insert(float, int) - Method in class imagescience.array.FloatArray
Inserts the given float at the given index in the array.
insert(int, int) - Method in class imagescience.array.IntArray
Inserts the given int at the given index in the array.
insert(long, int) - Method in class imagescience.array.LongArray
Inserts the given long at the given index in the array.
insert(short, int) - Method in class imagescience.array.ShortArray
Inserts the given short at the given index in the array.
instance(ImagePlus) - Static method in class imagescience.utility.I5DResource
Indicates whether an image is an instance of Image5D.
IntArray - Class in imagescience.array
A dynamic array of int values.
IntArray() - Constructor for class imagescience.array.IntArray
Default constructor.
IntArray(int) - Constructor for class imagescience.array.IntArray
Capacity constructor.
IntArray(int, int) - Constructor for class imagescience.array.IntArray
Capacity constructor.
IntArray(int[]) - Constructor for class imagescience.array.IntArray
Array constructor.
intersect(Region) - Method in class imagescience.shape.Region
Sets the shape of this region to the intersection of its current shape and the shape of the given region.
inverse(Image, Image, Axes) - Method in class imagescience.fourier.FFT
Applies the inverse Fourier transform to complex-valued images along the specified axes.
invert() - Method in class imagescience.image.Image
Replaces every image element by its inverted value.
invert() - Method in class imagescience.transform.Transform
Inverts the transformation matrix.

K

KURTOSIS - Static variable in class imagescience.feature.Statistics
The Fisher kurtosis or fourth-order moment about the mean of the values in the image.

L

L1NORM - Static variable in class imagescience.feature.Statistics
The L1-norm or sum of the magnitudes of the values in the image.
L2NORM - Static variable in class imagescience.feature.Statistics
The L2-norm or zero-mean standard deviation of the values in the image.
Laplacian - Class in imagescience.feature
Computes the Laplacian of images.
Laplacian() - Constructor for class imagescience.feature.Laplacian
Default constructor.
last() - Method in class imagescience.array.ByteArray
Returns the last element of the array.
last() - Method in class imagescience.array.DoubleArray
Returns the last element of the array.
last() - Method in class imagescience.array.FloatArray
Returns the last element of the array.
last() - Method in class imagescience.array.IntArray
Returns the last element of the array.
last() - Method in class imagescience.array.LongArray
Returns the last element of the array.
last() - Method in class imagescience.array.ShortArray
Returns the last element of the array.
length() - Method in class imagescience.array.ByteArray
Returns the number of elements in the array.
length(int) - Method in class imagescience.array.ByteArray
Sets the length of the array to the given length.
length() - Method in class imagescience.array.DoubleArray
Returns the number of elements in the array.
length(int) - Method in class imagescience.array.DoubleArray
Sets the length of the array to the given length.
length() - Method in class imagescience.array.FloatArray
Returns the number of elements in the array.
length(int) - Method in class imagescience.array.FloatArray
Sets the length of the array to the given length.
length() - Method in class imagescience.array.IntArray
Returns the number of elements in the array.
length(int) - Method in class imagescience.array.IntArray
Sets the length of the array to the given length.
length() - Method in class imagescience.array.LongArray
Returns the number of elements in the array.
length(int) - Method in class imagescience.array.LongArray
Sets the length of the array to the given length.
length() - Method in class imagescience.array.ShortArray
Returns the number of elements in the array.
length(int) - Method in class imagescience.array.ShortArray
Sets the length of the array to the given length.
LINEAR - Static variable in class imagescience.transform.Affine
Linear interpolation.
LINEAR - Static variable in class imagescience.transform.Rotate
Linear interpolation.
LINEAR - Static variable in class imagescience.transform.Scale
Linear interpolation.
LINEAR - Static variable in class imagescience.transform.Translate
Linear interpolation.
LineReader - Class in imagescience.utility
Reads text line-by-line from a character stream using buffering for efficiency.
LineReader(Reader) - Constructor for class imagescience.utility.LineReader
Constructs a buffered line reader from the given character stream reader.
lines() - Method in class imagescience.utility.LineReader
Returns the number of lines read using this reader.
lngamma(double) - Static method in class imagescience.utility.FMath
Returns the natural logarithm of the Gamma function at x.
log() - Method in class imagescience.utility.Messenger
Indicates whether log messages are displayed.
log(boolean) - Method in class imagescience.utility.Messenger
Enables or disables displaying of log messages.
log(String) - Method in class imagescience.utility.Messenger
Displays the given log message if displaying is enabled for such messages.
lommelu(int, int, double, double) - Static method in class imagescience.utility.FMath
Returns the value at (u,v) of the series expansion of the Lommel U-function of order n evaluated to t terms.
lommelv(int, int, double, double) - Static method in class imagescience.utility.FMath
Returns the value at (u,v) of the series expansion of the Lommel V-function of order n evaluated to t terms.
LongArray - Class in imagescience.array
A dynamic array of long values.
LongArray() - Constructor for class imagescience.array.LongArray
Default constructor.
LongArray(int) - Constructor for class imagescience.array.LongArray
Capacity constructor.
LongArray(int, int) - Constructor for class imagescience.array.LongArray
Capacity constructor.
LongArray(long[]) - Constructor for class imagescience.array.LongArray
Array constructor.
lower - Variable in class imagescience.shape.Bounds
Contains the lower bound for each dimension.

M

MAGNIFIER - Static variable in class imagescience.utility.MouseCursor
The custom magnifier cursor type.
major(double) - Method in class imagescience.shape.Ellipse
Sets the major radius of the ellipse.
major() - Method in class imagescience.shape.Ellipse
Returns the major radius of the ellipse.
MASS - Static variable in class imagescience.feature.Statistics
The mass or sum of the values in the image.
max(double, double) - Static method in class imagescience.utility.FMath
Returns the maximum of the given values.
max(double, double, double, double) - Static method in class imagescience.utility.FMath
Returns the maximum of the given values.
max(double, double, double, double, double, double, double, double) - Static method in class imagescience.utility.FMath
Returns the maximum of the given values.
max(double) - Method in class imagescience.utility.Progressor
Specifies the maximum displayed progress value.
max() - Method in class imagescience.utility.Progressor
Returns the maximum displayed progress value.
MAX_ORDER - Static variable in class imagescience.feature.Differentiator
The largest supported order of differentiation.
MAXIMA - Static variable in class imagescience.segment.Extremizer
The maxima type.
MAXIMUM - Static variable in class imagescience.feature.Statistics
The maximum value in the image.
maximum() - Method in class imagescience.image.Image
Returns the maximum value in the image.
MAXIMUM - Static variable in class imagescience.transform.Embed
Background filling with the maximum value in the input image.
MEAN - Static variable in class imagescience.feature.Statistics
The mean of the values in the image.
MEDIAN - Static variable in class imagescience.feature.Statistics
The median of the values in the image.
memory() - Method in class imagescience.image.ByteImage
 
memory() - Method in class imagescience.image.ColorImage
 
memory() - Method in class imagescience.image.FloatImage
 
memory() - Method in class imagescience.image.Image
Returns the amount of memory occupied by the image data.
memory() - Method in class imagescience.image.ShortImage
 
messenger - Variable in class imagescience.feature.Differentiator
The object used for message displaying.
messenger - Variable in class imagescience.feature.Edges
The object used for message displaying.
messenger - Variable in class imagescience.feature.Hessian
The object used for message displaying.
messenger - Variable in class imagescience.feature.Laplacian
The object used for message displaying.
messenger - Variable in class imagescience.feature.Smoother
The object used for message displaying.
messenger - Variable in class imagescience.feature.Statistics
The object used for message displaying.
messenger - Variable in class imagescience.feature.Structure
The object used for message displaying.
messenger - Variable in class imagescience.fourier.FFT
The object used for message displaying.
messenger - Variable in class imagescience.random.Randomizer
The object used for message displaying.
messenger - Variable in class imagescience.segment.Extremizer
The object used for message displaying.
messenger - Variable in class imagescience.segment.Thresholder
The object used for message displaying.
messenger - Variable in class imagescience.segment.ZeroCrosser
The object used for message displaying.
messenger - Variable in class imagescience.transform.Affine
The object used for message displaying.
messenger - Variable in class imagescience.transform.Crop
The object used for message displaying.
messenger - Variable in class imagescience.transform.Embed
The object used for message displaying.
messenger - Variable in class imagescience.transform.Mirror
The object used for message displaying.
messenger - Variable in class imagescience.transform.Rotate
The object used for message displaying.
messenger - Variable in class imagescience.transform.Scale
The object used for message displaying.
messenger - Variable in class imagescience.transform.Translate
The object used for message displaying.
messenger - Variable in class imagescience.transform.Turn
The object used for message displaying.
Messenger - Class in imagescience.utility
Displays various types of messages.
Messenger() - Constructor for class imagescience.utility.Messenger
Default constructor.
messenger - Variable in class imagescience.utility.MouseCursor
The object used for message displaying.
messenger - Variable in class imagescience.utility.Timer
The object used for message displaying.
min(double, double) - Static method in class imagescience.utility.FMath
Returns the minimum of the given values.
min(double, double, double, double) - Static method in class imagescience.utility.FMath
Returns the minimum of the given values.
min(double, double, double, double, double, double, double, double) - Static method in class imagescience.utility.FMath
Returns the minimum of the given values.
min(double) - Method in class imagescience.utility.Progressor
Specifies the minimum displayed progress value.
min() - Method in class imagescience.utility.Progressor
Returns the minimum displayed progress value.
MINIMA - Static variable in class imagescience.segment.Extremizer
The minima type.
MINIMUM - Static variable in class imagescience.feature.Statistics
The minimum value in the image.
minimum() - Method in class imagescience.image.Image
Returns the minimum value in the image.
MINIMUM - Static variable in class imagescience.transform.Embed
Background filling with the minimum value in the input image.
minmax(ImagePlus, double, double) - Static method in class imagescience.utility.I5DResource
Sets the minimum and maximum displayed value of all channels of an image.
minor(double) - Method in class imagescience.shape.Ellipse
Sets the minor radius of the ellipse.
minor() - Method in class imagescience.shape.Ellipse
Returns the minor radius of the ellipse.
mirror(Borders) - Method in class imagescience.image.ByteImage
 
mirror(Borders) - Method in class imagescience.image.ColorImage
 
mirror(Borders) - Method in class imagescience.image.FloatImage
 
mirror(Borders) - Method in class imagescience.image.Image
Sets the image elements in the borders by mirroring the remainder of the image.
mirror(Borders) - Method in class imagescience.image.ShortImage
 
MIRROR - Static variable in class imagescience.transform.Embed
Background filling by mirroring the values in the input image.
Mirror - Class in imagescience.transform
Mirrors an image.
Mirror() - Constructor for class imagescience.transform.Mirror
Default constructor.
mode() - Method in class imagescience.color.Palette
Returns the palette mode.
MODE - Static variable in class imagescience.feature.Statistics
The mode or most frequently occurring value in the image.
mode(ImagePlus, int) - Static method in class imagescience.utility.I5DResource
Sets the displaying mode of an image.
MODULATORY - Static variable in class imagescience.random.Randomizer
Modulatory insertion of random numbers.
MouseCursor - Class in imagescience.utility
Provides custom-made mouse cursors.
MouseCursor() - Constructor for class imagescience.utility.MouseCursor
Default constructor.
MULTIPLICATIVE - Static variable in class imagescience.random.Randomizer
Multiplicative insertion of random numbers.
multiply(double) - Method in class imagescience.image.Image
Multiplies every image element with a value.
multiply(Image) - Method in class imagescience.image.Image
Multiplies this image element-by-element with an image.

N

name(String) - Method in class imagescience.image.Image
Sets the name of this image.
name() - Method in class imagescience.image.Image
Returns the name of this image.
name() - Static method in class imagescience.ImageScience
Returns the name of the library.
nan(String) - Method in class imagescience.utility.Formatter
Sets the string representation of the value Double.NaN used by method Formatter.d2s(double).
NEAREST - Static variable in class imagescience.transform.Affine
Nearest-neighbor interpolation.
NEAREST - Static variable in class imagescience.transform.Rotate
Nearest-neighbor interpolation.
NEAREST - Static variable in class imagescience.transform.Scale
Nearest-neighbor interpolation.
NEAREST - Static variable in class imagescience.transform.Translate
Nearest-neighbor interpolation.
next() - Method in class imagescience.color.Palette
Returns the next color.
next() - Method in class imagescience.random.BinomialGenerator
Returns a random number from the binomial distribution with number of trials and probability specified at construction.
next(int, double) - Method in class imagescience.random.BinomialGenerator
Returns a random number from the binomial distribution with given number of trials of given probability.
next() - Method in class imagescience.random.ExponentialGenerator
Returns a random number from the exponential distribution with lambda specified at construction.
next(double) - Method in class imagescience.random.ExponentialGenerator
Returns a random number from the exponential distribution with given lambda.
next() - Method in class imagescience.random.GammaGenerator
Returns a random number from the gamma distribution with order specified at construction.
next(int) - Method in class imagescience.random.GammaGenerator
Returns a random number from the gamma distribution with given order.
next() - Method in class imagescience.random.GaussianGenerator
Returns a random number from the Gaussian distribution with mean and standard deviation specified at construction.
next(double, double) - Method in class imagescience.random.GaussianGenerator
Returns a random number from the Gaussian distribution with given mean and standard deviation stdev.
next() - Method in class imagescience.random.PoissonGenerator
Returns a random number from the Poisson distribution with mean specified at construction.
next(double) - Method in class imagescience.random.PoissonGenerator
Returns a random number from the Poisson distribution with given mean.
next() - Method in interface imagescience.random.RandomGenerator
Returns a random number.
next() - Method in class imagescience.random.UniformGenerator
Returns a uniform random number in the interval specified at construction.
next(double, double) - Method in class imagescience.random.UniformGenerator
Returns a uniform random number in the open interval (min,max).
nocolor(ImagePlus) - Static method in class imagescience.utility.I5DResource
Disables the color model of all channels of an image.
nodensity(ImagePlus) - Static method in class imagescience.utility.I5DResource
Disables the density calibration of all channels of an image.

O

OMOMS3 - Static variable in class imagescience.transform.Affine
Cubic O-MOMS interpolation [5].
omoms3(double[], int) - Method in class imagescience.transform.Prefilter
Applies cubic O-MOMS prefiltering to an array.
omoms3(Image, Axes, Borders) - Method in class imagescience.transform.Prefilter
Applies cubic O-MOMS prefiltering to an image.
OMOMS3 - Static variable in class imagescience.transform.Rotate
Cubic O-MOMS interpolation [5].
OMOMS3 - Static variable in class imagescience.transform.Scale
Cubic O-MOMS interpolation [5].
OMOMS3 - Static variable in class imagescience.transform.Translate
Cubic O-MOMS interpolation [5].
OVERLAY - Static variable in class imagescience.utility.I5DResource
The overlay displaying mode.

P

Palette - Class in imagescience.color
A palette of 100 different colors.
Palette() - Constructor for class imagescience.color.Palette
Default constructor.
Palette(int) - Constructor for class imagescience.color.Palette
Mode constructor.
parent(Progressor) - Method in class imagescience.utility.Progressor
Sets the parent object for progress displaying.
parent() - Method in class imagescience.utility.Progressor
Returns the parent object for progress displaying.
pause() - Method in class imagescience.utility.Timer
Pauses the timer.
perimeter() - Method in class imagescience.shape.Circle
Returns the perimeter of the circle.
perimeter() - Method in class imagescience.shape.Ellipse
Returns the perimeter of the ellipse.
perimeter() - Method in class imagescience.shape.Polygon
Returns the perimeter of the polygon.
perimeter() - Method in class imagescience.shape.Rectangle
Returns the perimeter of the rectangle.
perimeter() - Method in class imagescience.shape.Spline
Returns the perimeter of the spline.
perimeter() - Method in class imagescience.shape.Square
Returns the perimeter of the square.
PLUS - Static variable in class imagescience.utility.MouseCursor
The custom plus cursor type.
Point - Class in imagescience.shape
A point in 5D space.
Point() - Constructor for class imagescience.shape.Point
Default constructor.
Point(double) - Constructor for class imagescience.shape.Point
One-dimensional constructor.
Point(double, double) - Constructor for class imagescience.shape.Point
Two-dimensional constructor.
Point(double, double, double) - Constructor for class imagescience.shape.Point
Three-dimensional constructor.
Point(double, double, double, double) - Constructor for class imagescience.shape.Point
Four-dimensional constructor.
Point(double, double, double, double, double) - Constructor for class imagescience.shape.Point
Five-dimensional constructor.
Point(Point) - Constructor for class imagescience.shape.Point
Copy constructor.
poisson(Image, double, int, boolean) - Method in class imagescience.random.Randomizer
Randomizes images using a Poisson random variable.
PoissonGenerator - Class in imagescience.random
Poisson random number generator.
PoissonGenerator() - Constructor for class imagescience.random.PoissonGenerator
Constructs a generator of random numbers from the Poisson distribution with unit mean and initialized with a random seed.
PoissonGenerator(int) - Constructor for class imagescience.random.PoissonGenerator
Constructs a generator of random numbers from the Poisson distribution with unit mean and initialized with the given seed.
PoissonGenerator(double) - Constructor for class imagescience.random.PoissonGenerator
Constructs a generator of random numbers from the Poisson distribution with given mean and initialized with a random seed.
PoissonGenerator(double, int) - Constructor for class imagescience.random.PoissonGenerator
Constructs a generator of random numbers from the Poisson distribution with given mean and initialized with the given seed.
Polygon - Class in imagescience.shape
A polygon in the x-y plane.
Polygon() - Constructor for class imagescience.shape.Polygon
Default constructor.
Polygon(Vector<Point>) - Constructor for class imagescience.shape.Polygon
Constructs a polygon from the given vertices.
Polygon(Polygon) - Constructor for class imagescience.shape.Polygon
Copy constructor.
position(double, double) - Method in class imagescience.shape.Circle
Sets the center position of the circle.
position(double, double) - Method in class imagescience.shape.Ellipse
Sets the center position of the ellipse.
position(double, double) - Method in class imagescience.shape.Rectangle
Sets the top-left corner position of the rectangle.
position(double, double) - Method in class imagescience.shape.Square
Sets the top-left position of the square.
position(ImagePlus, int) - Static method in class imagescience.utility.I5DResource
Returns the current position of an image in a specific dimension.
position(ImagePlus, int, int) - Static method in class imagescience.utility.I5DResource
Sets the position of an image in a specific dimension.
position(ImagePlus, int, int, int, int, int) - Static method in class imagescience.utility.I5DResource
Sets the position of an image in each dimension.
power(double) - Method in class imagescience.image.Image
Replaces every image element by its value raised to a power.
power2(int) - Static method in class imagescience.utility.FMath
Indicates whether the given integer value is a power of 2.
Prefilter - Class in imagescience.transform
Prefilters an array or image for different interpolation schemes.
Prefilter() - Constructor for class imagescience.transform.Prefilter
Default constructor.
prelude() - Static method in class imagescience.ImageScience
Returns the name and version number of the library appended with a colon and space.
processor(ImagePlus, int) - Static method in class imagescience.utility.I5DResource
Returns the processor of a specific channel of an image.
progressor - Variable in class imagescience.feature.Differentiator
The object used for progress displaying.
progressor - Variable in class imagescience.feature.Edges
The object used for progress displaying.
progressor - Variable in class imagescience.feature.Hessian
The object used for progress displaying.
progressor - Variable in class imagescience.feature.Laplacian
The object used for progress displaying.
progressor - Variable in class imagescience.feature.Smoother
The object used for progress displaying.
progressor - Variable in class imagescience.feature.Statistics
The object used for progress displaying.
progressor - Variable in class imagescience.feature.Structure
The object used for progress displaying.
progressor - Variable in class imagescience.fourier.FFT
The object used for progress displaying.
progressor - Variable in class imagescience.random.Randomizer
The object used for progress displaying.
progressor - Variable in class imagescience.segment.Extremizer
The object used for progress displaying.
progressor - Variable in class imagescience.segment.Thresholder
The object used for progress displaying.
progressor - Variable in class imagescience.segment.ZeroCrosser
The object used for progress displaying.
progressor - Variable in class imagescience.transform.Affine
The object used for progress displaying.
progressor - Variable in class imagescience.transform.Crop
The object used for progress displaying.
progressor - Variable in class imagescience.transform.Embed
The object used for progress displaying.
progressor - Variable in class imagescience.transform.Mirror
The object used for progress displaying.
progressor - Variable in class imagescience.transform.Rotate
The object used for progress displaying.
progressor - Variable in class imagescience.transform.Scale
The object used for progress displaying.
progressor - Variable in class imagescience.transform.Translate
The object used for progress displaying.
progressor - Variable in class imagescience.transform.Turn
The object used for progress displaying.
Progressor - Class in imagescience.utility
Wrapper around ImageJ's progress bar.
Progressor() - Constructor for class imagescience.utility.Progressor
Default constructor.

R

radii(double, double) - Method in class imagescience.shape.Ellipse
Sets the radii of the ellipse.
radius(double) - Method in class imagescience.shape.Circle
Sets the radius of the circle.
radius() - Method in class imagescience.shape.Circle
Returns the radius of the circle.
RandomGenerator - Interface in imagescience.random
Interface for random number generators.
Randomizer - Class in imagescience.random
Randomizes images.
Randomizer() - Constructor for class imagescience.random.Randomizer
Default constructor.
range(double, double) - Method in class imagescience.utility.Progressor
Specifies the minimum and maximum displayed progress value.
read() - Method in class imagescience.utility.LineReader
Reads a line of text.
Rectangle - Class in imagescience.shape
A rectangle in the x-y plane.
Rectangle() - Constructor for class imagescience.shape.Rectangle
Default constructor.
Rectangle(double, double, double, double) - Constructor for class imagescience.shape.Rectangle
Constructs a rectangle with given top-left corner position, width and height.
Rectangle(Rectangle) - Constructor for class imagescience.shape.Rectangle
Copy constructor.
RED - Static variable in class imagescience.image.ColorImage
The red component (stored in bits 16-23).
Region - Class in imagescience.shape
An arbitrarily but discretely shaped region in the x-y plane.
Region() - Constructor for class imagescience.shape.Region
Default constructor.
Region(Image) - Constructor for class imagescience.shape.Region
Image constructor.
Region(Region) - Constructor for class imagescience.shape.Region
Copy constructor.
remove(int) - Method in class imagescience.array.ByteArray
Removes the element at the given index from the array.
remove(int) - Method in class imagescience.array.DoubleArray
Removes the element at the given index from the array.
remove(int) - Method in class imagescience.array.FloatArray
Removes the element at the given index from the array.
remove(int) - Method in class imagescience.array.IntArray
Removes the element at the given index from the array.
remove(int) - Method in class imagescience.array.LongArray
Removes the element at the given index from the array.
remove(int) - Method in class imagescience.array.ShortArray
Removes the element at the given index from the array.
render(Point3f, float, Point3f) - Method in class imagescience.mesh.Cone
Returns a copy of the cone mesh with given base and apex position and with given base radius.
render(Point3f, float) - Method in class imagescience.mesh.Cube
Returns a copy of the cube mesh at the given center position and with given edge length.
render(Point3f, float, Point3f, float) - Method in class imagescience.mesh.Cylinder
Returns a copy of the cylinder mesh with given base and end position and correponding radii.
render(Point3f, float) - Method in class imagescience.mesh.Sphere
Returns a copy of the sphere mesh at the given center position and with given radius.
REPEAT - Static variable in class imagescience.transform.Embed
Background filling by repeating the values in the input image.
reset() - Method in class imagescience.array.ByteArray
Removes all elements.
reset() - Method in class imagescience.array.DoubleArray
Removes all elements.
reset() - Method in class imagescience.array.FloatArray
Removes all elements.
reset() - Method in class imagescience.array.IntArray
Removes all elements.
reset() - Method in class imagescience.array.LongArray
Removes all elements.
reset() - Method in class imagescience.array.ShortArray
Removes all elements.
reset() - Method in class imagescience.color.Palette
Resets the counter used by the Palette.next() method.
reset() - Method in class imagescience.image.Coordinates
Resets the coordinates to their default values.
reset() - Method in class imagescience.shape.Region
Restores this region to an empty region.
reset() - Method in class imagescience.transform.Transform
Resets the transformation matrix to the identity matrix.
resume() - Method in class imagescience.utility.Timer
Resumes the timer.
rgba(double, double[]) - Method in class imagescience.color.Wave2Color
Converts a wavelength to its corresponding RGBA color values.
rgba(double) - Method in class imagescience.color.Wave2Color
Converts a wavelength to its corresponding RGBA color values.
rotate(double) - Method in class imagescience.shape.Ellipse
Increases the angle of the ellipse by the given amount.
Rotate - Class in imagescience.transform
Rotates an image using different interpolation schemes.
Rotate() - Constructor for class imagescience.transform.Rotate
Default constructor.
rotate(double, int) - Method in class imagescience.transform.Transform
Rotates the transformation matrix.
round(double) - Static method in class imagescience.utility.FMath
Returns the given value rounded to the nearest integral value.
run(Image, double, int, int, int) - Method in class imagescience.feature.Differentiator
Computes derivatives of images.
run(Image, double, boolean) - Method in class imagescience.feature.Edges
Detects edges in images.
run(Image, double, boolean) - Method in class imagescience.feature.Hessian
Computes Hessian eigenimages of images.
run(Image, double) - Method in class imagescience.feature.Laplacian
Computes the Laplacian of images.
run(Image) - Method in class imagescience.feature.Statistics
Computes the statistics of an image.
run(Image, Coordinates, Coordinates) - Method in class imagescience.feature.Statistics
Computes the statistics of an image in a rectangular region of interest.
run(Image, Coordinates, Coordinates, Image) - Method in class imagescience.feature.Statistics
Computes the statistics of an image in a masked rectangular region of interest.
run(Image, double, double) - Method in class imagescience.feature.Structure
Computes structure tensor eigenimages of images.
run(Image, int, int) - Method in class imagescience.segment.Extremizer
Finds local extrema in an image.
run(Image) - Method in class imagescience.segment.ZeroCrosser
Detects zero-crossings in an image.
run(Image, Transform, int, boolean, boolean, boolean) - Method in class imagescience.transform.Affine
Affine transforms an image.
run(Image, Coordinates, Coordinates) - Method in class imagescience.transform.Crop
Crops an image.
run(Image, Dimensions, Coordinates, int) - Method in class imagescience.transform.Embed
Embeds an image.
run(Image, Axes) - Method in class imagescience.transform.Mirror
Mirrors an image.
run(Image, double, double, double, int, boolean, boolean, boolean) - Method in class imagescience.transform.Rotate
Rotates an image.
run(Image, double, double, double, double, double, int) - Method in class imagescience.transform.Scale
Scales an image.
run(Image, double, double, double, int) - Method in class imagescience.transform.Translate
Translates an image.
run(Image, int, int, int) - Method in class imagescience.transform.Turn
Turns an image.

S

Scale - Class in imagescience.transform
Scales an image using different interpolation schemes.
Scale() - Constructor for class imagescience.transform.Scale
Default constructor.
scale(double, int) - Method in class imagescience.transform.Transform
Scales the transformation matrix.
SDEVIATION - Static variable in class imagescience.feature.Statistics
The standard deviation from the mean of the values in the image.
set(byte, int) - Method in class imagescience.array.ByteArray
Replaces the element at the given index in the array by the given byte.
set(byte[]) - Method in class imagescience.array.ByteArray
Sets the internal array to the given array.
set(double, int) - Method in class imagescience.array.DoubleArray
Replaces the element at the given index in the array by the given double.
set(double[]) - Method in class imagescience.array.DoubleArray
Sets the internal array to the given array.
set(float, int) - Method in class imagescience.array.FloatArray
Replaces the element at the given index in the array by the given float.
set(float[]) - Method in class imagescience.array.FloatArray
Sets the internal array to the given array.
set(int, int) - Method in class imagescience.array.IntArray
Replaces the element at the given index in the array by the given int.
set(int[]) - Method in class imagescience.array.IntArray
Sets the internal array to the given array.
set(long, int) - Method in class imagescience.array.LongArray
Replaces the element at the given index in the array by the given long.
set(long[]) - Method in class imagescience.array.LongArray
Sets the internal array to the given array.
set(short, int) - Method in class imagescience.array.ShortArray
Replaces the element at the given index in the array by the given short.
set(short[]) - Method in class imagescience.array.ShortArray
Sets the internal array to the given array.
set(double) - Method in class imagescience.image.ByteImage
 
set(Borders, double) - Method in class imagescience.image.ByteImage
 
set(Coordinates, double) - Method in class imagescience.image.ByteImage
 
set(Coordinates, double[]) - Method in class imagescience.image.ByteImage
 
set(Coordinates, double[][]) - Method in class imagescience.image.ByteImage
 
set(Coordinates, double[][][]) - Method in class imagescience.image.ByteImage
 
set(Coordinates, double[][][][]) - Method in class imagescience.image.ByteImage
 
set(Coordinates, double[][][][][]) - Method in class imagescience.image.ByteImage
 
set(Coordinates, float[]) - Method in class imagescience.image.ByteImage
 
set(Coordinates, float[][]) - Method in class imagescience.image.ByteImage
 
set(Coordinates, float[][][]) - Method in class imagescience.image.ByteImage
 
set(Coordinates, float[][][][]) - Method in class imagescience.image.ByteImage
 
set(Coordinates, float[][][][][]) - Method in class imagescience.image.ByteImage
 
set(Image) - Method in class imagescience.image.ColorImage
Sets the currently active component to the given image.
set(double) - Method in class imagescience.image.ColorImage
 
set(Borders, double) - Method in class imagescience.image.ColorImage
 
set(Coordinates, double) - Method in class imagescience.image.ColorImage
 
set(Coordinates, double[]) - Method in class imagescience.image.ColorImage
 
set(Coordinates, double[][]) - Method in class imagescience.image.ColorImage
 
set(Coordinates, double[][][]) - Method in class imagescience.image.ColorImage
 
set(Coordinates, double[][][][]) - Method in class imagescience.image.ColorImage
 
set(Coordinates, double[][][][][]) - Method in class imagescience.image.ColorImage
 
set(Coordinates, float[]) - Method in class imagescience.image.ColorImage
 
set(Coordinates, float[][]) - Method in class imagescience.image.ColorImage
 
set(Coordinates, float[][][]) - Method in class imagescience.image.ColorImage
 
set(Coordinates, float[][][][]) - Method in class imagescience.image.ColorImage
 
set(Coordinates, float[][][][][]) - Method in class imagescience.image.ColorImage
 
set(Coordinates) - Method in class imagescience.image.Coordinates
Sets the coordinates to the given coordinates.
set(double) - Method in class imagescience.image.FloatImage
 
set(Borders, double) - Method in class imagescience.image.FloatImage
 
set(Coordinates, double) - Method in class imagescience.image.FloatImage
 
set(Coordinates, double[]) - Method in class imagescience.image.FloatImage
 
set(Coordinates, double[][]) - Method in class imagescience.image.FloatImage
 
set(Coordinates, double[][][]) - Method in class imagescience.image.FloatImage
 
set(Coordinates, double[][][][]) - Method in class imagescience.image.FloatImage
 
set(Coordinates, double[][][][][]) - Method in class imagescience.image.FloatImage
 
set(Coordinates, float[]) - Method in class imagescience.image.FloatImage
 
set(Coordinates, float[][]) - Method in class imagescience.image.FloatImage
 
set(Coordinates, float[][][]) - Method in class imagescience.image.FloatImage
 
set(Coordinates, float[][][][]) - Method in class imagescience.image.FloatImage
 
set(Coordinates, float[][][][][]) - Method in class imagescience.image.FloatImage
 
set(double) - Method in class imagescience.image.Image
Sets every image element to the given value.
set(Borders, double) - Method in class imagescience.image.Image
Sets every image element in the borders to the given value.
set(Coordinates, double) - Method in class imagescience.image.Image
Sets the image element at the given coordinates to the given value.
set(Coordinates, float[]) - Method in class imagescience.image.Image
Writes values in one dimension from the array into the image.
set(Coordinates, double[]) - Method in class imagescience.image.Image
Writes values in one dimension from the array into the image.
set(Coordinates, float[][]) - Method in class imagescience.image.Image
Writes values in two dimensions from the array into the image.
set(Coordinates, double[][]) - Method in class imagescience.image.Image
Writes values in two dimensions from the array into the image.
set(Coordinates, float[][][]) - Method in class imagescience.image.Image
Writes values in three dimensions from the array into the image.
set(Coordinates, double[][][]) - Method in class imagescience.image.Image
Writes values in three dimensions from the array into the image.
set(Coordinates, float[][][][]) - Method in class imagescience.image.Image
Writes values in four dimensions from the array into the image.
set(Coordinates, double[][][][]) - Method in class imagescience.image.Image
Writes values in four dimensions from the array into the image.
set(Coordinates, float[][][][][]) - Method in class imagescience.image.Image
Writes values in all five dimensions from the array into the image.
set(Coordinates, double[][][][][]) - Method in class imagescience.image.Image
Writes values in all five dimensions from the array into the image.
set(double) - Method in class imagescience.image.ShortImage
 
set(Borders, double) - Method in class imagescience.image.ShortImage
 
set(Coordinates, double) - Method in class imagescience.image.ShortImage
 
set(Coordinates, double[]) - Method in class imagescience.image.ShortImage
 
set(Coordinates, double[][]) - Method in class imagescience.image.ShortImage
 
set(Coordinates, double[][][]) - Method in class imagescience.image.ShortImage
 
set(Coordinates, double[][][][]) - Method in class imagescience.image.ShortImage
 
set(Coordinates, double[][][][][]) - Method in class imagescience.image.ShortImage
 
set(Coordinates, float[]) - Method in class imagescience.image.ShortImage
 
set(Coordinates, float[][]) - Method in class imagescience.image.ShortImage
 
set(Coordinates, float[][][]) - Method in class imagescience.image.ShortImage
 
set(Coordinates, float[][][][]) - Method in class imagescience.image.ShortImage
 
set(Coordinates, float[][][][][]) - Method in class imagescience.image.ShortImage
 
set(double, double, double) - Method in class imagescience.shape.Circle
Sets the center position and radius of the circle.
set(double, double, double, double, double) - Method in class imagescience.shape.Ellipse
Sets the center position, major and minor radii, and the angle of the ellipse.
set(double) - Method in class imagescience.shape.Point
Sets the one-dimensional position of the point.
set(double, double) - Method in class imagescience.shape.Point
Sets the two-dimensional position of the point.
set(double, double, double) - Method in class imagescience.shape.Point
Sets the three-dimensional position of the point.
set(double, double, double, double) - Method in class imagescience.shape.Point
Sets the four-dimensional position of the point.
set(double, double, double, double, double) - Method in class imagescience.shape.Point
Sets the five-dimensional position of the point.
set(Point) - Method in class imagescience.shape.Point
Sets the coordinates of this point to the coordinates of the given point.
set(Vector<Point>) - Method in class imagescience.shape.Polygon
Sets the vertices of the polygon to the given vertices.
set(double, double, double, double) - Method in class imagescience.shape.Rectangle
Sets the top-left corner position and size of the rectangle.
set(Vector<Point>) - Method in class imagescience.shape.Spline
Sets the vertices of the spline to the given vertices.
set(double, double, double) - Method in class imagescience.shape.Square
Sets the top-left position and edge length of the square.
set(Transform) - Method in class imagescience.transform.Transform
Sets the elements of the transformation matrix to those of the given transform.
set(double, double, double, double, double, double, double, double, double, double, double, double) - Method in class imagescience.transform.Transform
Sets the elements of the transformation matrix to the given values.
set(double[][]) - Method in class imagescience.transform.Transform
Sets the elements of the transformation matrix to those of the given array.
set(int, int, double) - Method in class imagescience.transform.Transform
Sets the element at the given row and column of the transformation matrix to the given value.
set(long) - Method in class imagescience.utility.Progressor
Sets the internal step counter to the given value.
Shape - Interface in imagescience.shape
Interface for objects representing closed and bounded geometrical figures up to 5D.
shear(double, int, int) - Method in class imagescience.transform.Transform
Shears the transformation matrix.
ShortArray - Class in imagescience.array
A dynamic array of short values.
ShortArray() - Constructor for class imagescience.array.ShortArray
Default constructor.
ShortArray(int) - Constructor for class imagescience.array.ShortArray
Capacity constructor.
ShortArray(int, int) - Constructor for class imagescience.array.ShortArray
Capacity constructor.
ShortArray(short[]) - Constructor for class imagescience.array.ShortArray
Array constructor.
ShortImage - Class in imagescience.image
An image containing up to 5D elements of type short.
ShortImage(Dimensions) - Constructor for class imagescience.image.ShortImage
Dimensions constructor.
ShortImage(ImagePlus) - Constructor for class imagescience.image.ShortImage
Wrapper constructor.
ShortImage(Image) - Constructor for class imagescience.image.ShortImage
Copy constructor.
ShortImage(Image, Borders) - Constructor for class imagescience.image.ShortImage
Copy constructor that allows adding borders.
SIGHT - Static variable in class imagescience.utility.MouseCursor
The custom sight cursor type.
sinc(double) - Static method in class imagescience.utility.FMath
Returns the value of the sinc function at x.
size() - Method in class imagescience.array.ByteArray
Returns the number of elements in the array.
size(int) - Method in class imagescience.array.ByteArray
Sets the length of the array to the given length.
size() - Method in class imagescience.array.DoubleArray
Returns the number of elements in the array.
size(int) - Method in class imagescience.array.DoubleArray
Sets the length of the array to the given length.
size() - Method in class imagescience.array.FloatArray
Returns the number of elements in the array.
size(int) - Method in class imagescience.array.FloatArray
Sets the length of the array to the given length.
size() - Method in class imagescience.array.IntArray
Returns the number of elements in the array.
size(int) - Method in class imagescience.array.IntArray
Sets the length of the array to the given length.
size() - Method in class imagescience.array.LongArray
Returns the number of elements in the array.
size(int) - Method in class imagescience.array.LongArray
Sets the length of the array to the given length.
size() - Method in class imagescience.array.ShortArray
Returns the number of elements in the array.
size(int) - Method in class imagescience.array.ShortArray
Sets the length of the array to the given length.
size(double, double) - Method in class imagescience.shape.Rectangle
Sets the size of the rectangle.
SKEWNESS - Static variable in class imagescience.feature.Statistics
The Fisher skewness or third-order moment about the mean of the values in the image.
Smoother - Class in imagescience.feature
Smoothes images.
Smoother() - Constructor for class imagescience.feature.Smoother
Default constructor.
SPECTRUM - Static variable in class imagescience.color.Palette
The spectrum mode.
Sphere - Class in imagescience.mesh
Triangular mesh of a sphere in 3D.
Sphere(int) - Constructor for class imagescience.mesh.Sphere
Constructs the mesh of a unit sphere at the given level of detail.
Spline - Class in imagescience.shape
A closed, interpolating, C²-continuous, cubic spline curve in the x-y plane.
Spline() - Constructor for class imagescience.shape.Spline
Default constructor.
Spline(Vector<Point>) - Constructor for class imagescience.shape.Spline
Constructs a spline from the given vertices.
Spline(Spline) - Constructor for class imagescience.shape.Spline
Copy constructor.
square() - Method in class imagescience.image.Image
Replaces every image element by its square value.
Square - Class in imagescience.shape
A square in the x-y plane.
Square() - Constructor for class imagescience.shape.Square
Default constructor.
Square(double, double, double) - Constructor for class imagescience.shape.Square
Constructs a square with top-left position and edge length.
Square(Square) - Constructor for class imagescience.shape.Square
Copy constructor.
squareroot() - Method in class imagescience.image.Image
Replaces every image element by its square root value.
start() - Method in class imagescience.utility.Progressor
Starts the progress displaying.
start() - Method in class imagescience.utility.Timer
Starts the timer.
Statistics - Class in imagescience.feature
Computes image statistics.
Statistics() - Constructor for class imagescience.feature.Statistics
Default constructor.
status() - Method in class imagescience.utility.Messenger
Indicates whether status messages are displayed.
status(boolean) - Method in class imagescience.utility.Messenger
Enables or disables displaying of status messages.
status(String) - Method in class imagescience.utility.Messenger
Displays the given status message if displaying is enabled for such messages.
status(String) - Method in class imagescience.utility.Progressor
Sets the status message.
status() - Method in class imagescience.utility.Progressor
Returns the status message.
step() - Method in class imagescience.utility.Progressor
Increases the internal step counter.
step(long) - Method in class imagescience.utility.Progressor
Increases the internal step counter by the given amount.
steps(long) - Method in class imagescience.utility.Progressor
Specifies the number of steps in the process.
steps() - Method in class imagescience.utility.Progressor
Returns the number of steps in the process.
stop() - Method in class imagescience.utility.Progressor
Stops the progress displaying.
stop() - Method in class imagescience.utility.Timer
Stops the timer and returns the elapsed time with millisecond precision.
string() - Method in class imagescience.transform.Transform
Returns a string representation of the transformation matrix.
string(String, String, String) - Method in class imagescience.transform.Transform
Returns a formatted string representation of the transformation matrix.
Structure - Class in imagescience.feature
Computes eigenimages of the structure tensor.
Structure() - Constructor for class imagescience.feature.Structure
Default constructor.
subtract(double) - Method in class imagescience.image.Image
Subtracts a value from every image element.
subtract(Image) - Method in class imagescience.image.Image
Subtracts an image element-by-element from this image.
subtract(Region) - Method in class imagescience.shape.Region
Subtracts the shape of the given region from the shape of this region.

T

t - Variable in class imagescience.image.Aspects
The absolute or relative aspect size in the t-dimension.
T - Static variable in class imagescience.image.Axes
The t-axis.
t - Variable in class imagescience.image.Axes
Indicates whether the t-axis is active.
t - Variable in class imagescience.image.Borders
The border size in the t-dimension.
t - Variable in class imagescience.image.Coordinates
The t-coordinate.
t - Variable in class imagescience.image.Dimensions
The t-dimension.
t - Variable in class imagescience.shape.Point
The t-coordinate of the point.
Thresholder - Class in imagescience.segment
Thresholds images.
Thresholder() - Constructor for class imagescience.segment.Thresholder
Default constructor.
TILED - Static variable in class imagescience.utility.I5DResource
The tiled displaying mode.
time() - Method in class imagescience.utility.Timer
Returns the elapsed time with millisecond precision.
Timer - Class in imagescience.utility
Facilitates measuring of the computation time consumed by a process.
Timer() - Constructor for class imagescience.utility.Timer
Default constructor.
transfer(ImagePlus, ImagePlus) - Static method in class imagescience.utility.I5DResource
Transfers all channel properties from source to destination image.
transfer(ImagePlus, ImagePlus, int[][]) - Static method in class imagescience.utility.I5DResource
Transfers the properties of specific channels from source to destination image.
transfer(ImagePlus, ImagePlus, int) - Static method in class imagescience.utility.I5DResource
Transfers the properties of a specific source image channel to the current processor and stack of a destination image.
Transform - Class in imagescience.transform
Represents a 3D affine transformation matrix.
Transform() - Constructor for class imagescience.transform.Transform
Default constructor.
Transform(Transform) - Constructor for class imagescience.transform.Transform
Copy constructor.
Transform(double[][]) - Constructor for class imagescience.transform.Transform
Array constructor.
Transform(double, double, double, double, double, double, double, double, double, double, double, double) - Constructor for class imagescience.transform.Transform
Element constructor.
transform(Transform) - Method in class imagescience.transform.Transform
Transforms the transformation matrix.
transform(Point) - Method in class imagescience.transform.Transform
Transforms the given point.
translate(double, double) - Method in class imagescience.shape.Circle
Translates the circle over the given distance.
translate(double, double) - Method in class imagescience.shape.Ellipse
Translates the ellipse over the given distance.
translate(double) - Method in class imagescience.shape.Point
Translates the point in one dimension.
translate(double, double) - Method in class imagescience.shape.Point
Translates the point in two dimensions.
translate(double, double, double) - Method in class imagescience.shape.Point
Translates the point in three dimensions.
translate(double, double, double, double) - Method in class imagescience.shape.Point
Translates the point in four dimensions.
translate(double, double, double, double, double) - Method in class imagescience.shape.Point
Translates the point in five dimensions.
translate(double, double) - Method in class imagescience.shape.Polygon
Translates the polygon over the given distance.
translate(double, double) - Method in class imagescience.shape.Rectangle
Translates the rectangle over the given distance.
translate(int, int) - Method in class imagescience.shape.Region
Translates the region over the given distance.
translate(double, double) - Method in class imagescience.shape.Spline
Translates the spline over the given distance.
translate(double, double) - Method in class imagescience.shape.Square
Translates the square over the given distance.
translate(double, int) - Method in class imagescience.transform.Transform
Translates the transformation matrix.
Translate - Class in imagescience.transform
Translates an image using different interpolation schemes.
Translate() - Constructor for class imagescience.transform.Translate
Default constructor.
trim() - Method in class imagescience.array.ByteArray
Trims the capacity of the array down to the length of the array.
trim() - Method in class imagescience.array.DoubleArray
Trims the capacity of the array down to the length of the array.
trim() - Method in class imagescience.array.FloatArray
Trims the capacity of the array down to the length of the array.
trim() - Method in class imagescience.array.IntArray
Trims the capacity of the array down to the length of the array.
trim() - Method in class imagescience.array.LongArray
Trims the capacity of the array down to the length of the array.
trim() - Method in class imagescience.array.ShortArray
Trims the capacity of the array down to the length of the array.
Turn - Class in imagescience.transform
Rotates an image multiples of 90 degrees around its principal axes.
Turn() - Constructor for class imagescience.transform.Turn
Default constructor.
type() - Method in class imagescience.image.ByteImage
 
type() - Method in class imagescience.image.ColorImage
 
type() - Method in class imagescience.image.FloatImage
 
type() - Method in class imagescience.image.Image
Returns the image type.
type() - Method in class imagescience.image.ShortImage
 

U

uniform(Image, double, double, int, boolean) - Method in class imagescience.random.Randomizer
Randomizes images using a uniform random variable.
UniformGenerator - Class in imagescience.random
Uniform random number generator.
UniformGenerator() - Constructor for class imagescience.random.UniformGenerator
Constructs a generator of random numbers uniformly distributed in the open interval (0,1) and initialized with a random seed.
UniformGenerator(int) - Constructor for class imagescience.random.UniformGenerator
Constructs a generator of random numbers uniformly distributed in the open interval (0,1) and initialized with the given seed.
UniformGenerator(double, double) - Constructor for class imagescience.random.UniformGenerator
Constructs a generator of random numbers uniformly distributed in the open interval (min,max) and initialized with a random seed.
UniformGenerator(double, double, int) - Constructor for class imagescience.random.UniformGenerator
Constructs a generator of random numbers uniformly distributed in the open interval (min,max) and initialized with the given seed.
update() - Method in class imagescience.shape.Spline
Makes the spline recompute its shape from its vertices.
updates(long) - Method in class imagescience.utility.Progressor
Specifies the number of progress updates displayed by the progress bar.
updates() - Method in class imagescience.utility.Progressor
Returns the number of progress updates displayed by the progress bar.
upper - Variable in class imagescience.shape.Bounds
Contains the upper bound for each dimension.
used(Color) - Method in class imagescience.color.Palette
Marks the given color as used if it is in the palette.

V

VARIANCE - Static variable in class imagescience.feature.Statistics
The variance or second-order moment about the mean of the values in the image.
version() - Static method in class imagescience.ImageScience
Returns the version number of the library.
VersionChecker - Class in imagescience.utility
Compares version strings.
VersionChecker() - Constructor for class imagescience.utility.VersionChecker
Default constructor.
vertices(Vector<Point>) - Method in class imagescience.shape.Polygon
Sets the vertices of the polygon to the given vertices.
vertices() - Method in class imagescience.shape.Polygon
Returns a new Vector object containing the handles of the vertices of the polygon.
vertices(Vector<Point>) - Method in class imagescience.shape.Spline
Sets the vertices of the spline to the given vertices.
vertices() - Method in class imagescience.shape.Spline
Returns a new Vector object containing the handles of the vertices of the spline.
VTKResource - Class in imagescience.utility
Resource class for working with the Visualization Toolkit (VTK) in the current environment.
VTKResource() - Constructor for class imagescience.utility.VTKResource
Default constructor.

W

Wave2Color - Class in imagescience.color
Converts wavelengths of light to corresponding RGBA color values.
Wave2Color() - Constructor for class imagescience.color.Wave2Color
Default constructor.
width(double) - Method in class imagescience.shape.Rectangle
Sets the width of the rectangle.
width() - Method in class imagescience.shape.Rectangle
Returns the width of the rectangle.
wrap(ImagePlus) - Static method in class imagescience.image.Image
Creates a wrapper Image of the given ImagePlus object.

X

x - Variable in class imagescience.image.Aspects
The absolute or relative aspect size in the x-dimension.
X - Static variable in class imagescience.image.Axes
The x-axis.
x - Variable in class imagescience.image.Axes
Indicates whether the x-axis is active.
x - Variable in class imagescience.image.Borders
The border size in the x-dimension.
x - Variable in class imagescience.image.Coordinates
The x-coordinate.
x - Variable in class imagescience.image.Dimensions
The x-dimension.
x(double) - Method in class imagescience.shape.Circle
Sets the x-coordinate of the center position of the circle.
x() - Method in class imagescience.shape.Circle
Returns the x-coordinate of the center position of the circle.
x(double) - Method in class imagescience.shape.Ellipse
Sets the x-coordinate of the center position of the ellipse.
x() - Method in class imagescience.shape.Ellipse
Returns the x-coordinate of the center position of the ellipse.
x - Variable in class imagescience.shape.Point
The x-coordinate of the point.
x(double) - Method in class imagescience.shape.Rectangle
Sets the x-coordinate of the top-left corner of the rectangle.
x() - Method in class imagescience.shape.Rectangle
Returns the x-coordinate of the top-left corner of the rectangle.
x(double) - Method in class imagescience.shape.Square
Sets the x-coordinate of the top-left position of the square.
x() - Method in class imagescience.shape.Square
Returns the x-coordinate of the top-left position of the square.

Y

y - Variable in class imagescience.image.Aspects
The absolute or relative aspect size in the y-dimension.
Y - Static variable in class imagescience.image.Axes
The y-axis.
y - Variable in class imagescience.image.Axes
Indicates whether the y-axis is active.
y - Variable in class imagescience.image.Borders
The border size in the y-dimension.
y - Variable in class imagescience.image.Coordinates
The y-coordinate.
y - Variable in class imagescience.image.Dimensions
The y-dimension.
y(double) - Method in class imagescience.shape.Circle
Sets the y-coordinate of the center position of the circle.
y() - Method in class imagescience.shape.Circle
Returns the y-coordinate of the center position of the circle.
y(double) - Method in class imagescience.shape.Ellipse
Sets the y-coordinate of the center position of the ellipse.
y() - Method in class imagescience.shape.Ellipse
Returns the y-coordinate of the center position of the ellipse.
y - Variable in class imagescience.shape.Point
The y-coordinate of the point.
y(double) - Method in class imagescience.shape.Rectangle
Sets the y-coordinate of the top-left corner of the rectangle.
y() - Method in class imagescience.shape.Rectangle
Returns the y-coordinate of the top-left corner of the rectangle.
y(double) - Method in class imagescience.shape.Square
Sets the y-coordinate of the top-left position of the square.
y() - Method in class imagescience.shape.Square
Returns the y-coordinate of the top-left position of the square.

Z

z - Variable in class imagescience.image.Aspects
The absolute or relative aspect size in the z-dimension.
Z - Static variable in class imagescience.image.Axes
The z-axis.
z - Variable in class imagescience.image.Axes
Indicates whether the z-axis is active.
z - Variable in class imagescience.image.Borders
The border size in the z-dimension.
z - Variable in class imagescience.image.Coordinates
The z-coordinate.
z - Variable in class imagescience.image.Dimensions
The z-dimension.
z - Variable in class imagescience.shape.Point
The z-coordinate of the point.
ZERO - Static variable in class imagescience.transform.Embed
Background filling with value 0.
ZeroCrosser - Class in imagescience.segment
Detects zero-crossings in images.
ZeroCrosser() - Constructor for class imagescience.segment.ZeroCrosser
Default constructor.

A B C D E F G H I K L M N O P R S T U V W X Y Z
ImageScience 3.0.0

Copyright (C) Erik Meijering. Permission to use this software and corresponding documentation for educational, research, and not-for-profit purposes, without a fee and without a signed licensing agreement, is granted, subject to the following terms and conditions.

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